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AmiBase microbiome OTU data


Below are the OTU analysis results of microbiome data from the studies conducted in ASEAN countries, grouped by habitat types. The metagenomic raw sequence data were downloaded from NCBI Bioproject and OTU-binned using Kaiju.

Each downloadable file contains a list of OTU taxonomic names, SRA accession number of samples, and read counts in a tab-separated format.


If you use our results in your published work, please cite;

AnMicro. “AmiBase - ASEAN Microbial Database”. Retrieved 07 December 2019 (https://www.amibase.org/microbiome_download.php).
Habitat
Environment Total OTU
Air
9,265
Freshwater
61,536
Marine
7,705
Sludge
54,763
Soil
59,407
Wastewater
64,519
Water sedument
41,291
Total 298,486
Hosts
Environment Total OTU
Bioreactor
22,741
Food
19,480
Hot spring
7,233
Human gut
38,323
Human other parts
15,944
Insect
44,247
Non-insect invertebrate
7,883
Plant
12,825
Rhizophere
18,336
Vertebrate
61,163
Total 248,175