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AmiBase microbiome OTU data


Below are the OTU analysis results of microbiome data from the studies conducted in ASEAN countries, grouped by habitat types. The metagenomic raw sequence data were downloaded from NCBI Bioproject and OTU-binned using Kaiju.

Each downloadable file contains a list of OTU taxonomic names, SRA accession number of samples, and read counts in a tab-separated format.


If you use our results in your published work, please cite;

AnMicro. “AmiBase - ASEAN Microbial Database”. Retrieved 08 April 2020 (https://www.amibase.org/microbiome_download.php).
Habitat
Environment Total Identified Species
Air
4,222
Bioreactor
8,739
Food
7,703
Freshwater
17,163
Hot spring
3,131
Marine
2,873
Rhizophere
7,975
Sludge
15,486
Soil
17,033
Wastewater
16,906
Water sediment
12,468
Host-associated
Environment Total Identified Species
Human gut
11,536
Human other parts
6,467
Insect
14,060
Non-insect invertebrate
3,408
Plant
5,595
Vertebrate
17,439